STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98860.1ABC transporter, ATP-binding protein. (272 aa)    
Predicted Functional Partners:
EHG98862.1
Hypothetical protein.
      0.887
EHH00539.1
Hypothetical protein.
  
     0.747
EHG99176.1
Phosphate-selective porin O and P.
  
     0.703
EHH01107.1
Hypothetical protein.
  
     0.695
EHG98444.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.52.
  
     0.685
EHG98859.1
Putative DNA helicase.
 
     0.633
EHH01128.1
Hypothetical protein.
  
     0.632
EHH00794.1
PAP2 family protein; KEGG: cbb:CLD_1099 0.0075 undecaprenyl-diphosphatase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.615
EHG99285.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.607
EHH01011.1
Hypothetical protein.
 
     0.581
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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