STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98668.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (224 aa)    
Predicted Functional Partners:
EHH00044.1
Hypothetical protein; KEGG: bse:Bsel_1765 0.00013 CheA signal transduction histidine kinase K03407.
   
 
 0.809
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.806
EHG98666.1
KEGG: bvu:BVU_3687 5.6e-254 type I restriction enzyme EcoR124II M protein; K03427 type I restriction enzyme M protein; Psort location: Cytoplasmic, score: 8.96.
       0.785
EHG98670.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.778
EHG98667.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EHG98669.1
Type I restriction enzyme HsdR protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.765
EHG98664.1
KEGG: lmc:Lm4b_00545 3.7e-44 specificity determinant HsdS; K01154 type I restriction enzyme, S subunit; Psort location: Cytoplasmic, score: 8.96.
       0.762
EHG98665.1
Toxin-antitoxin system, toxin component, Fic family; Psort location: Cytoplasmic, score: 8.96.
       0.762
EHG98663.1
Hypothetical protein; KEGG: msi:Msm_0158 7.5e-21 type I restriction-modification system methylase, subunit S; K01154 type I restriction enzyme, S subunit.
 
     0.734
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.