STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98714.1PAP2 family protein; KEGG: gfo:GFO_3394 0.00070 secreted PAP2 superfamily protein K01112; Psort location: OuterMembrane, score: 9.49. (419 aa)    
Predicted Functional Partners:
EHH00871.1
KEGG: bfr:BF1321 3.1e-95 O-succinylbenzoic acid-CoA ligase; K01911 O-succinylbenzoic acid--CoA ligase; Psort location: Cytoplasmic, score: 9.97.
    
 0.782
EHH01276.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
    
 
 0.702
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.676
EHG98712.1
Putative response regulator ArlR; KEGG: rru:Rru_A0525 3.7e-28 two component transcriptional regulator / cell cycle transcriptional regulator CtrA K13584; Psort location: Cytoplasmic, score: 9.97.
    0.674
EHG98715.1
Transcriptional regulator, AraC family; KEGG: lla:L0149 1.8e-10 adaA; methylphosphotriester-DNA alkyltransferase; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 8.96.
 
     0.663
EHG98713.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: gfo:GFO_1224 4.2e-43 two-component system sensor histidine kinase K00936; Psort location: CytoplasmicMembrane, score: 7.88.
 
    0.661
EHG99912.1
Hypothetical protein.
  
     0.619
EHG98450.1
SusD family protein; Psort location: OuterMembrane, score: 9.49.
    
 
 0.611
EHH01280.1
V-type ATPase subunit family protein; KEGG: bvu:BVU_3562 1.7e-124 putative V-type ATP synthase subunit I; K02123 V-type H+-transporting ATPase subunit I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase 116 kDa subunit family.
    
   0.579
EHH00044.1
Hypothetical protein; KEGG: bse:Bsel_1765 0.00013 CheA signal transduction histidine kinase K03407.
    
   0.573
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.