STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98268.1N-acetylmuramoyl-L-alanine amidase; KEGG: bay:RBAM_022470 4.0e-31 yqiI; YqiI; K01448 N-acetylmuramoyl-L-alanine amidase; Psort location: Cytoplasmic, score: 8.96. (213 aa)    
Predicted Functional Partners:
EHG98267.1
Hypothetical protein; KEGG: edi:EDI_341030 7.4e-22 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 9.97.
       0.773
EHG99907.1
Hypothetical protein; KEGG: snc:HMPREF0837_11342 0.00044 iga; IgA-specific metalloendopeptidase; Psort location: OuterMembrane, score: 9.52.
     
 0.741
EHG99549.1
KEGG: pru:PRU_0014 5.1e-141 transglycosylase SLT/LysM domain-containing protein; K08307 membrane-bound lytic murein transglycosylase D; Psort location: Cytoplasmic, score: 8.96.
    
 0.671
EHG99748.1
Hypothetical protein.
    
   0.606
EHG98269.1
Protein AraJ; KEGG: rcp:RCAP_rcc03385 0.0018 emrB; multidrug resistance protein B K03446; Psort location: CytoplasmicMembrane, score: 10.00.
       0.605
EHH01085.1
TonB family domain protein.
   
 
  0.573
EHH01163.1
Peptidase, S54 family; KEGG: pmz:HMPREF0659_A6317 6.1e-90 peptidase, S54 family; Psort location: CytoplasmicMembrane, score: 10.00.
   
   0.568
EHH00418.1
KEGG: aca:ACP_3298 5.3e-23 peptidase, S54 (rhomboid) family; Psort location: CytoplasmicMembrane, score: 10.00.
   
   0.568
hisS
histidine--tRNA ligase; KEGG: bfs:BF3238 9.6e-195 hisS; histidyl-tRNA synthetase K01892; Psort location: Cytoplasmic, score: 9.97.
       0.541
EHG99942.1
Peptidase, M23 family; KEGG: mxa:MXAN_5348 7.7e-19 M23 peptidase domain-containing protein K01417; Psort location: OuterMembrane, score: 8.28.
 
  
 0.482
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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