STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHG98121.1Hypothetical protein; KEGG: lba:Lebu_0823 2.0e-27 tryptophan synthase subunit beta; K01696 tryptophan synthase beta chain; Psort location: Cytoplasmic, score: 9.26. (67 aa)    
Predicted Functional Partners:
EHG98120.1
Hypothetical protein; KEGG: lba:Lebu_0823 2.5e-36 tryptophan synthase subunit beta; K01696 tryptophan synthase beta chain; Psort location: Cytoplasmic, score: 9.26.
     0.991
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
 0.986
EHG98146.1
Hypothetical protein; KEGG: lba:Lebu_0823 2.4e-31 tryptophan synthase subunit beta; K01696 tryptophan synthase beta chain; Psort location: Cytoplasmic, score: 9.26.
 
     0.976
EHG99191.1
KEGG: bvu:BVU_4091 4.6e-76 trpC; indole-3-glycerol-phosphate synthase; K01609 indole-3-glycerol phosphate synthase; Psort location: Cytoplasmic, score: 9.97; Belongs to the TrpC family.
 
 0.906
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
 
 
 0.865
trpF
KEGG: bfr:BF2655 4.3e-50 putative N-(5'-phosphoribosyl)anthranilate isomerase; K01817 phosphoribosylanthranilate isomerase; Psort location: Cytoplasmic, score: 8.96; Belongs to the TrpF family.
 
 
 0.810
EHG99187.1
KEGG: bvu:BVU_4089 1.2e-70 anthranilate synthase component II; K01658 anthranilate synthase component II; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.770
EHH00729.1
KEGG: bvu:BVU_3892 1.2e-148 threonine dehydratase; K01754 threonine dehydratase; Psort location: Cytoplasmic, score: 9.97.
   
 0.750
EHH00970.1
Homoserine dehydrogenase.
   
 
 0.730
EHH00745.1
Phosphoserine phosphatase SerB; KEGG: bvu:BVU_3158 3.7e-177 putative phosphoserine phosphatase; K01079 phosphoserine phosphatase; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.693
Your Current Organism:
Paraprevotella clara
NCBI taxonomy Id: 762968
Other names: P. clara YIT 11840, Paraprevotella clara YIT 11840, Paraprevotella clara str. YIT 11840, Paraprevotella clara strain YIT 11840
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