STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGG52531.1Conserved domain protein; KEGG: sen:SACE_3956 2.5e-05 nucleotidyltransferase K00992; Psort location: Cytoplasmic, score: 8.96. (522 aa)    
Predicted Functional Partners:
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
       0.762
EGG52530.1
Efflux ABC transporter, permease protein; KEGG: apb:SAR116_0522 7.0e-26 ABC-type transport system, permease component K09808; Psort location: CytoplasmicMembrane, score: 10.00.
       0.762
EGG52528.1
O-methyltransferase; KEGG: bth:BT_2840 4.4e-87 O-methyltransferase; K00599; Psort location: Cytoplasmic, score: 9.97.
       0.746
EGG52527.1
Pyruvate kinase; KEGG: bvu:BVU_0876 7.3e-213 pyruvate kinase K00873; Psort location: Cytoplasmic, score: 9.97.
       0.720
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.603
EGG52535.1
Peptidase, C39 family; KEGG: npu:Npun_F3519 1.7e-37 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; Psort location: CytoplasmicMembrane, score: 10.00.
       0.534
EGG52532.1
Conserved domain protein; Psort location: Cytoplasmic, score: 8.96.
       0.493
EGG52533.1
Conserved domain protein; Psort location: Cytoplasmic, score: 8.96.
       0.493
EGG52534.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.493
xerC-2
Tyrosine recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.447
Your Current Organism:
Paraprevotella xylaniphila
NCBI taxonomy Id: 762982
Other names: P. xylaniphila YIT 11841, Paraprevotella xylaniphila YIT 11841, Paraprevotella xylaniphila str. YIT 11841, Paraprevotella xylaniphila strain YIT 11841
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