STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG34338.1B3/B4 domain-containing protein (DNA/RNA-binding domain of Phe-tRNA-synthetase). (220 aa)    
Predicted Functional Partners:
SHG34305.1
Conserved hypothetical protein; Manually curated; Belongs to the multicopper oxidase YfiH/RL5 family.
  
    0.840
SHG34277.1
GTP-binding protein.
       0.825
SHG34365.1
Phosphate starvation-inducible protein PhoH.
       0.667
SHG12025.1
Hypothetical protein.
  
     0.626
SHG29142.1
Protein of unknown function.
 
     0.618
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family.
       0.617
SHG77166.1
2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinase.
  
     0.541
SHG36002.1
Smr domain-containing protein.
  
     0.539
SHG30348.1
Protein of unknown function.
  
     0.506
SHG34251.1
Pathogenicity locus.
       0.494
Your Current Organism:
Bacteroides clarus
NCBI taxonomy Id: 762984
Other names: B. clarus YIT 12056, Bacteroides clarus DSM 22519, Bacteroides clarus JCM 16067, Bacteroides clarus YIT 12056, Bacteroides clarus str. YIT 12056, Bacteroides clarus strain YIT 12056, Bacteroides sp. YIT 12056
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