STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH16284.1Protein of unknown function. (279 aa)    
Predicted Functional Partners:
SHH16254.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain.
       0.842
SHH16227.1
O-acetylhomoserine sulfhydrylase.
       0.681
mnmA-2
tRNA-specific 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.419
Your Current Organism:
Bacteroides clarus
NCBI taxonomy Id: 762984
Other names: B. clarus YIT 12056, Bacteroides clarus DSM 22519, Bacteroides clarus JCM 16067, Bacteroides clarus YIT 12056, Bacteroides clarus str. YIT 12056, Bacteroides clarus strain YIT 12056, Bacteroides sp. YIT 12056
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.