STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH20532.1Periplasmic chaperone for outer membrane proteins Skp. (171 aa)    
Predicted Functional Partners:
SHH20500.1
Beta-barrel assembly machine subunit BamA.
 
  
 0.956
SHH20569.1
Periplasmic chaperone for outer membrane proteins Skp.
 
    
0.771
SHG75502.1
Beta-barrel assembly machine subunit BamD.
 
   
 0.763
SHG29545.1
Hypothetical protein.
  
     0.723
SHG16047.1
Hypothetical protein.
  
   
 0.718
SHH20469.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
       0.705
SHH20434.1
Hypothetical protein.
 
  
 0.684
SHG39122.1
Periplasmic chaperone for outer membrane proteins SurA.
  
  
 0.672
SHG94753.1
Protein of unknown function.
  
     0.670
SHH22730.1
BadF-type ATPase.
  
     0.639
Your Current Organism:
Bacteroides clarus
NCBI taxonomy Id: 762984
Other names: B. clarus YIT 12056, Bacteroides clarus DSM 22519, Bacteroides clarus JCM 16067, Bacteroides clarus YIT 12056, Bacteroides clarus str. YIT 12056, Bacteroides clarus strain YIT 12056, Bacteroides sp. YIT 12056
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.