Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EGF56947.1Alpha-2-macroglobulin family protein. (1969 aa)    
Predicted Functional Partners:
EGF56946.1
Hypothetical protein.
       0.587
EGF56945.1
LAO/AO transport system ATPase; KEGG: bth:BT_4049 5.9e-179 arginine/ornithine transport system ATPase; K07588 LAO/AO transport system kinase; Psort location: CytoplasmicMembrane, score: 7.88.
       0.564
EGF52600.1
Endonuclease/exonuclease/phosphatase family protein; KEGG: fnu:FN0047 0.0035 exodeoxyribonuclease III K01142; Psort location: CytoplasmicMembrane, score: 9.82.
  
     0.490
EGF59161.1
Hypothetical protein.
  
  
  0.473
EGF49307.1
Hypothetical protein.
  
     0.445
Your Current Organism:
Bacteroides fluxus
NCBI taxonomy Id: 763034
Other names: B. fluxus YIT 12057, Bacteroides fluxus DSM 22534, Bacteroides fluxus JCM 16101, Bacteroides fluxus YIT 12057, Bacteroides fluxus str. YIT 12057, Bacteroides fluxus strain YIT 12057, Bacteroides sp. YIT 12057
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