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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGF52052.1TonB-dependent receptor plug domain protein; Psort location: OuterMembrane, score: 9.52. (1012 aa)    
Predicted Functional Partners:
EGF52051.1
SusD family protein; Psort location: OuterMembrane, score: 9.52.
 
 
 0.962
EGF56434.1
SusD family protein.
  
 
   0.794
EGF58162.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.776
EGF56432.1
SusD family protein.
  
 
   0.776
EGF56871.1
SusD family protein.
  
 
   0.773
EGF56833.1
SusD family protein.
  
 
   0.768
EGF57529.1
SusD family protein; Psort location: Cytoplasmic, score: 8.96.
  
 
   0.751
EGF58528.1
SusD family protein.
  
 
   0.726
EGF59312.1
SusD family protein.
  
 
   0.720
EGF58105.1
SusD family protein.
  
 
   0.704
Your Current Organism:
Bacteroides fluxus
NCBI taxonomy Id: 763034
Other names: B. fluxus YIT 12057, Bacteroides fluxus DSM 22534, Bacteroides fluxus JCM 16101, Bacteroides fluxus YIT 12057, Bacteroides fluxus str. YIT 12057, Bacteroides fluxus strain YIT 12057, Bacteroides sp. YIT 12057
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.