STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSlysyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (548 aa)    
Predicted Functional Partners:
MCHK_5117
Hypothetical protein.
  
    0.772
MCHK_3114
Hypothetical protein.
  
     0.674
MCHK_5279
Hypothetical protein; Belongs to the UPF0335 family.
  
     0.589
cobT3
Cobaltochelatase, CobT subunit.
  
     0.587
gltX3
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
  
  
 0.583
MCHK_0046
2-dehydro-3-deoxyphosphooctonate aldolase.
       0.579
mgpS
Helicase conserved C-terminal domain protein.
  
     0.557
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.521
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
    0.492
cobS-2
Cobaltochelatase, CobS subunit.
  
     0.483
Your Current Organism:
Mesorhizobium huakuii
NCBI taxonomy Id: 763057
Other names: M. huakuii 7653R, Mesorhizobium huakuii 7653R, Mesorhizobium huakuii str. 7653R, Mesorhizobium huakuii strain 7653R
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