Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aau3Rrf2 family protein. (153 aa)    
Predicted Functional Partners:
nifS
Aminotransferase class-V family protein.
  
 
 0.807
nifU
nifU-like N terminal domain protein.
  
 
 0.631
fixN
Cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.574
irrA
Ferric uptake regulator family protein; Belongs to the Fur family.
     
 0.454
fixG
Cytochrome c oxidase accessory protein CcoG.
  
  
 0.440
fixO
Cytochrome c oxidase, cbb3-type, subunit II.
  
    0.418
fixQ
Cbb3-type cytochrome oxidase component FixQ family protein.
  
    0.406
MCHK_2801
Hypothetical protein.
  
    0.401
Your Current Organism:
Mesorhizobium huakuii
NCBI taxonomy Id: 763057
Other names: M. huakuii 7653R, Mesorhizobium huakuii 7653R, Mesorhizobium huakuii str. 7653R, Mesorhizobium huakuii strain 7653R
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