A0A162THF3 protein (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A162THF3

Uncharacterized protein. (351 aa)

Predicted Functional Partners:

A0A163A340

0.653

A0A167JMY0

0.653

A0A162XQU7

0.614

NDUFV2

0.597

Ndufv1

0.596

A0A162TGW3

0.501

A0A167KLL2

0.501

PbFumHa

0.491

PbFumHb

0.491

A0A162PYK7

0.443

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A162PYK7	A0A162TGW3	A0A162PYK7	A0A162TGW3	Uncharacterized protein.	DAO domain-containing protein.	0.688
A0A162PYK7	A0A162THF3	A0A162PYK7	A0A162THF3	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A162PYK7	A0A167JMY0	A0A162PYK7	A0A167JMY0	Uncharacterized protein.	Formyl_trans_N domain-containing protein.	0.649
A0A162PYK7	A0A167KLL2	A0A162PYK7	A0A167KLL2	Uncharacterized protein.	DAO domain-containing protein.	0.688
A0A162PYK7	Ndufv1	A0A162PYK7	A0A162TW06	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.659
A0A162PYK7	PbFumHa	A0A162PYK7	A0A167NNH2	Uncharacterized protein.	Fumarate hydratase.	0.518
A0A162PYK7	PbFumHb	A0A162PYK7	A0A167NV16	Uncharacterized protein.	Fumarate hydratase.	0.518
A0A162TGW3	A0A162PYK7	A0A162TGW3	A0A162PYK7	DAO domain-containing protein.	Uncharacterized protein.	0.688
A0A162TGW3	A0A162THF3	A0A162TGW3	A0A162THF3	DAO domain-containing protein.	Uncharacterized protein.	0.501
A0A162TGW3	NDUFV2	A0A162TGW3	A0A162NGD2	DAO domain-containing protein.	NDUFV2NADH dehydrogenase flavo protein subunit 2.	0.724
A0A162TGW3	Ndufv1	A0A162TGW3	A0A162TW06	DAO domain-containing protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.786
A0A162TGW3	PbFumHa	A0A162TGW3	A0A167NNH2	DAO domain-containing protein.	Fumarate hydratase.	0.775
A0A162TGW3	PbFumHb	A0A162TGW3	A0A167NV16	DAO domain-containing protein.	Fumarate hydratase.	0.775
A0A162THF3	A0A162PYK7	A0A162THF3	A0A162PYK7	Uncharacterized protein.	Uncharacterized protein.	0.443
A0A162THF3	A0A162TGW3	A0A162THF3	A0A162TGW3	Uncharacterized protein.	DAO domain-containing protein.	0.501
A0A162THF3	A0A162XQU7	A0A162THF3	A0A162XQU7	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.614
A0A162THF3	A0A163A340	A0A162THF3	A0A163A340	Uncharacterized protein.	Amidophosphoribosyltransferase.	0.653
A0A162THF3	A0A167JMY0	A0A162THF3	A0A167JMY0	Uncharacterized protein.	Formyl_trans_N domain-containing protein.	0.653
A0A162THF3	A0A167KLL2	A0A162THF3	A0A167KLL2	Uncharacterized protein.	DAO domain-containing protein.	0.501
A0A162THF3	NDUFV2	A0A162THF3	A0A162NGD2	Uncharacterized protein.	NDUFV2NADH dehydrogenase flavo protein subunit 2.	0.597