A0A162UM13 protein (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A162UM13

JAB_MPN domain-containing protein. (338 aa)

Predicted Functional Partners:

A0A162NK75

0.999

A0A163AM33

0.999

A0A163E9C7

0.999

A0A167P965

0.999

A0A167R3L1

0.999

A0A167L5G8

0.995

A0A167LU83

0.988

A0A163AX23

0.987

A0A162TKE2

0.963

A0A162Y0Z5

0.963

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162NK75	A0A162TKE2	PCI domain-containing protein.	RING-type domain-containing protein.	0.961
A0A162NK75	A0A162UM13	PCI domain-containing protein.	JAB_MPN domain-containing protein.	0.999
A0A162NK75	A0A162Y0Z5	PCI domain-containing protein.	Cullin; Belongs to the cullin family.	0.969
A0A162NK75	A0A163AM33	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0A162NK75	A0A163AX23	PCI domain-containing protein.	Ubiquitin-like domain-containing protein.	0.963
A0A162NK75	A0A163E9C7	PCI domain-containing protein.	MPN domain-containing protein.	0.999
A0A162NK75	A0A167L5G8	PCI domain-containing protein.	CSN8_PSD8_EIF3K domain-containing protein.	0.999
A0A162NK75	A0A167LU83	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0A162NK75	A0A167P965	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0A162NK75	A0A167R3L1	PCI domain-containing protein.	PCI domain-containing protein.	0.999
A0A162TKE2	A0A162NK75	RING-type domain-containing protein.	PCI domain-containing protein.	0.961
A0A162TKE2	A0A162UM13	RING-type domain-containing protein.	JAB_MPN domain-containing protein.	0.963
A0A162TKE2	A0A162Y0Z5	RING-type domain-containing protein.	Cullin; Belongs to the cullin family.	0.999
A0A162TKE2	A0A163AM33	RING-type domain-containing protein.	PCI domain-containing protein.	0.984
A0A162TKE2	A0A163AX23	RING-type domain-containing protein.	Ubiquitin-like domain-containing protein.	0.990
A0A162TKE2	A0A163E9C7	RING-type domain-containing protein.	MPN domain-containing protein.	0.978
A0A162TKE2	A0A167L5G8	RING-type domain-containing protein.	CSN8_PSD8_EIF3K domain-containing protein.	0.958
A0A162TKE2	A0A167LU83	RING-type domain-containing protein.	PCI domain-containing protein.	0.925
A0A162TKE2	A0A167P965	RING-type domain-containing protein.	PCI domain-containing protein.	0.975
A0A162TKE2	A0A167R3L1	RING-type domain-containing protein.	PCI domain-containing protein.	0.975