A0A163CU80 protein (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A163CU80

Glutamine amidotransferase type-1 domain-containing protein. (1366 aa)

Predicted Functional Partners:

A0A163A340

0.992

A0A162XQU7

0.990

A0A167JMY0

0.990

A0A167R063

0.982

A0A162PUQ4

0.981

A0A162NC19

0.979

A0A162NIB4

0.978

A0A167N067

0.960

A0A163BAF6

0.908

A0A167QMM9

0.864

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162NC19	A0A162PUQ4	MGS domain-containing protein.	SAICAR_synt domain-containing protein.	0.957
A0A162NC19	A0A162XQU7	MGS domain-containing protein.	ATP-grasp domain-containing protein.	0.989
A0A162NC19	A0A163A340	MGS domain-containing protein.	Amidophosphoribosyltransferase.	0.989
A0A162NC19	A0A163BAF6	MGS domain-containing protein.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.968
A0A162NC19	A0A163CU80	MGS domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.979
A0A162NC19	A0A167JMY0	MGS domain-containing protein.	Formyl_trans_N domain-containing protein.	0.987
A0A162NC19	A0A167N067	MGS domain-containing protein.	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.987
A0A162NC19	A0A167QMM9	MGS domain-containing protein.	Uncharacterized protein.	0.841
A0A162NC19	A0A167R063	MGS domain-containing protein.	ATP-grasp domain-containing protein.	0.959
A0A162NIB4	A0A162PUQ4	Uncharacterized protein.	SAICAR_synt domain-containing protein.	0.943
A0A162NIB4	A0A162XQU7	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.980
A0A162NIB4	A0A163A340	Uncharacterized protein.	Amidophosphoribosyltransferase.	0.985
A0A162NIB4	A0A163BAF6	Uncharacterized protein.	Adenylosuccinate synthetase; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.	0.963
A0A162NIB4	A0A163CU80	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.978
A0A162NIB4	A0A167JMY0	Uncharacterized protein.	Formyl_trans_N domain-containing protein.	0.980
A0A162NIB4	A0A167N067	Uncharacterized protein.	Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.983
A0A162NIB4	A0A167QMM9	Uncharacterized protein.	Uncharacterized protein.	0.841
A0A162NIB4	A0A167R063	Uncharacterized protein.	ATP-grasp domain-containing protein.	0.943
A0A162PUQ4	A0A162NC19	SAICAR_synt domain-containing protein.	MGS domain-containing protein.	0.957
A0A162PUQ4	A0A162NIB4	SAICAR_synt domain-containing protein.	Uncharacterized protein.	0.943