A0A167Q470 protein (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A167Q470

DDE_Tnp_IS1595 domain-containing protein. (145 aa)

Predicted Functional Partners:

A0A163E984

0.899

A0A162NBM8

0.865

A0A163D119

0.865

A0A167KVA2

0.846

A0A167QYE2

0.846

A0A162V3B0

0.844

A0A162U6T4

0.802

A0A167KVU4

0.802

A0A167PIB9

0.802

A0A162XGQ2

0.779

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162NBM8	A0A162U6T4	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.623
A0A162NBM8	A0A162V3B0	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.978
A0A162NBM8	A0A162XGQ2	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Vezatin domain-containing protein.	0.907
A0A162NBM8	A0A163E984	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.993
A0A162NBM8	A0A167KVA2	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_mis_repair domain-containing protein.	0.978
A0A162NBM8	A0A167KVU4	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.983
A0A162NBM8	A0A167PIB9	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.411
A0A162NBM8	A0A167Q470	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DDE_Tnp_IS1595 domain-containing protein.	0.865
A0A162NBM8	A0A167QYE2	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_mis_repair domain-containing protein.	0.979
A0A162U6T4	A0A162NBM8	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.623
A0A162U6T4	A0A162V3B0	Uncharacterized protein.	Uncharacterized protein.	0.869
A0A162U6T4	A0A162XGQ2	Uncharacterized protein.	Vezatin domain-containing protein.	0.854
A0A162U6T4	A0A163D119	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.616
A0A162U6T4	A0A163E984	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.575
A0A162U6T4	A0A167KVA2	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.904
A0A162U6T4	A0A167KVU4	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.544
A0A162U6T4	A0A167PIB9	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.998
A0A162U6T4	A0A167Q470	Uncharacterized protein.	DDE_Tnp_IS1595 domain-containing protein.	0.802
A0A162U6T4	A0A167QYE2	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.913
A0A162V3B0	A0A162NBM8	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.978