Mo01960 protein (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mo01960

Uncharacterized protein. (218 aa)

Predicted Functional Partners:

Mo05720

0.806

Mo05015

0.754

Mo00360

0.735

Mo02280

0.733

Mo02284

0.711

Mo02111

0.702

Mo04440

0.689

Mo02990

0.673

Mo04372

0.671

Mo04800

0.664

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00360	Mo01960	G7DT04	G7DXJ3	Uncharacterized protein.	Uncharacterized protein.	0.735
Mo00360	Mo02111	G7DT04	G7DXZ7	Uncharacterized protein.	Uncharacterized protein.	0.882
Mo00360	Mo02280	G7DT04	G7DYG4	Uncharacterized protein.	Uncharacterized protein.	0.777
Mo00360	Mo02284	G7DT04	G7DYG8	Uncharacterized protein.	Uncharacterized protein.	0.784
Mo00360	Mo02990	G7DT04	G7E0G4	Uncharacterized protein.	Uncharacterized protein.	0.778
Mo00360	Mo04440	G7DT04	G7E4K1	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.741
Mo00360	Mo04800	G7DT04	G7E5K7	Uncharacterized protein.	Uncharacterized protein.	0.826
Mo00360	Mo05015	G7DT04	G7E670	Uncharacterized protein.	Uncharacterized protein.	0.932
Mo00360	Mo05720	G7DT04	G7E871	Uncharacterized protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.985
Mo01960	Mo00360	G7DXJ3	G7DT04	Uncharacterized protein.	Uncharacterized protein.	0.735
Mo01960	Mo02111	G7DXJ3	G7DXZ7	Uncharacterized protein.	Uncharacterized protein.	0.702
Mo01960	Mo02280	G7DXJ3	G7DYG4	Uncharacterized protein.	Uncharacterized protein.	0.733
Mo01960	Mo02284	G7DXJ3	G7DYG8	Uncharacterized protein.	Uncharacterized protein.	0.711
Mo01960	Mo02990	G7DXJ3	G7E0G4	Uncharacterized protein.	Uncharacterized protein.	0.673
Mo01960	Mo04372	G7DXJ3	G7E4D4	Uncharacterized protein.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.671
Mo01960	Mo04440	G7DXJ3	G7E4K1	Uncharacterized protein.	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.	0.689
Mo01960	Mo04800	G7DXJ3	G7E5K7	Uncharacterized protein.	Uncharacterized protein.	0.664
Mo01960	Mo05015	G7DXJ3	G7E670	Uncharacterized protein.	Uncharacterized protein.	0.754
Mo01960	Mo05720	G7DXJ3	G7E871	Uncharacterized protein.	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.	0.806
Mo02111	Mo00360	G7DXZ7	G7DT04	Uncharacterized protein.	Uncharacterized protein.	0.882