Mo04789 protein (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mo04789

Uncharacterized protein. (1238 aa)

Predicted Functional Partners:

Mo00056

0.978

Mo04414

0.972

Mo04805

0.968

Mo06720

0.966

Mo00072

0.964

Mo03129

0.964

Mo04504

0.964

Mo01984

0.963

Mo06239

0.963

Mo03320

0.962

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo00056	Mo00072	G7DS55	G7DS71	C2H2-type domain-containing protein.	Uncharacterized protein.	0.988
Mo00056	Mo01984	G7DS55	G7DXL7	C2H2-type domain-containing protein.	Sm domain-containing protein.	0.993
Mo00056	Mo03129	G7DS55	G7E0V2	C2H2-type domain-containing protein.	Small nuclear ribonucleoprotein G.	0.983
Mo00056	Mo03320	G7DS55	G7E1D9	C2H2-type domain-containing protein.	Sm domain-containing protein.	0.982
Mo00056	Mo04414	G7DS55	G7E4H5	C2H2-type domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.981
Mo00056	Mo04504	G7DS55	G7E4R5	C2H2-type domain-containing protein.	Uncharacterized protein.	0.881
Mo00056	Mo04789	G7DS55	G7E5J7	C2H2-type domain-containing protein.	Uncharacterized protein.	0.978
Mo00056	Mo04805	G7DS55	G7E5L2	C2H2-type domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.974
Mo00056	Mo06239	G7DS55	G7E8S0	C2H2-type domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.994
Mo00056	Mo06720	G7DS55	G7EB07	C2H2-type domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.985
Mo00072	Mo00056	G7DS71	G7DS55	Uncharacterized protein.	C2H2-type domain-containing protein.	0.988
Mo00072	Mo01984	G7DS71	G7DXL7	Uncharacterized protein.	Sm domain-containing protein.	0.966
Mo00072	Mo03129	G7DS71	G7E0V2	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.994
Mo00072	Mo03320	G7DS71	G7E1D9	Uncharacterized protein.	Sm domain-containing protein.	0.994
Mo00072	Mo04414	G7DS71	G7E4H5	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.995
Mo00072	Mo04504	G7DS71	G7E4R5	Uncharacterized protein.	Uncharacterized protein.	0.947
Mo00072	Mo04789	G7DS71	G7E5J7	Uncharacterized protein.	Uncharacterized protein.	0.964
Mo00072	Mo04805	G7DS71	G7E5L2	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D3.	0.970
Mo00072	Mo06239	G7DS71	G7E8S0	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.973
Mo00072	Mo06720	G7DS71	G7EB07	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.994