Mo05480 protein (Mixia osmundae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Mo05480

Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (922 aa)

Predicted Functional Partners:

Mo01265

0.999

Mo04286

0.999

Mo01455

0.986

Mo05120

0.978

Mo02808

0.932

Mo05172

0.835

Mo06148

0.754

Mo05811

0.733

Mo02024

0.717

Mo02990

0.705

Your Current Organism:

Mixia osmundae

NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Mo01265	Mo01455	G7DVK3	G7DWB3	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	PX domain-containing protein.	0.892
Mo01265	Mo02024	G7DVK3	G7DXR0	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	PX domain-containing protein.	0.673
Mo01265	Mo02808	G7DVK3	G7DZY7	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	PX domain-containing protein.	0.968
Mo01265	Mo02990	G7DVK3	G7E0G4	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Uncharacterized protein.	0.617
Mo01265	Mo04286	G7DVK3	G7E448	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Uncharacterized protein.	0.998
Mo01265	Mo05120	G7DVK3	G7E6H4	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	PX domain-containing protein.	0.974
Mo01265	Mo05172	G7DVK3	G7E6M6	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Rab-GAP TBC domain-containing protein.	0.957
Mo01265	Mo05480	G7DVK3	G7E7I2	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.999
Mo01265	Mo05811	G7DVK3	G7E8G1	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	PX domain-containing protein.	0.711
Mo01265	Mo06148	G7DVK3	G7E9Y0	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.558
Mo01455	Mo01265	G7DWB3	G7DVK3	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.892
Mo01455	Mo02024	G7DWB3	G7DXR0	PX domain-containing protein.	PX domain-containing protein.	0.477
Mo01455	Mo02808	G7DWB3	G7DZY7	PX domain-containing protein.	PX domain-containing protein.	0.541
Mo01455	Mo04286	G7DWB3	G7E448	PX domain-containing protein.	Uncharacterized protein.	0.984
Mo01455	Mo05120	G7DWB3	G7E6H4	PX domain-containing protein.	PX domain-containing protein.	0.587
Mo01455	Mo05172	G7DWB3	G7E6M6	PX domain-containing protein.	Rab-GAP TBC domain-containing protein.	0.459
Mo01455	Mo05480	G7DWB3	G7E7I2	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.986
Mo01455	Mo05811	G7DWB3	G7E8G1	PX domain-containing protein.	PX domain-containing protein.	0.506
Mo01455	Mo06148	G7DWB3	G7E9Y0	PX domain-containing protein.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.476
Mo02024	Mo01265	G7DXR0	G7DVK3	PX domain-containing protein.	Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.	0.673