STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mo05963Uncharacterized protein. (338 aa)    
Predicted Functional Partners:
Mo00869
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
   
    0.509
Mo03442
Utp12 domain-containing protein.
   
    0.487
Mo05710
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the class I- [...]
   
    0.433
Mo03490
Brix domain-containing protein.
   
    0.407
Mo05130
Sas10 domain-containing protein.
   
    0.407
Mo04623
NUC153 domain-containing protein.
   
    0.406
Mo05109
CBF domain-containing protein.
   
    0.403
Mo03685
Uncharacterized protein.
   
    0.402
Mo02127
TRASH domain-containing protein.
   
    0.400
Mo02801
Uncharacterized protein.
   
    0.400
Your Current Organism:
Mixia osmundae
NCBI taxonomy Id: 764103
Other names: M. osmundae IAM 14324, Mixia osmundae IAM 14324
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.