Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHI70336.1Hypothetical protein. (212 aa)    
Predicted Functional Partners:
EHI70357.1
Ser/Thr protein phosphatase family protein; Belongs to the 5'-nucleotidase family.
  
    0.850
EHI70381.1
VanZ-like protein.
       0.773
rlmN
23S rRNA m2A2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.773
EHI70444.1
Lon protease S16 C-terminal proteolytic domain protein.
 
     0.728
EHI70489.1
Hypothetical protein; Belongs to the UPF0473 family.
  
     0.722
EHI70418.1
Integrase core domain protein.
       0.707
EHI69331.1
HAD hydrolase, TIGR01457 family.
 
  
 0.706
rpoE
DNA-directed RNA polymerase, delta subunit; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
  
     0.672
EHI70790.1
Bacterial ABC transporter protein EcsB domain protein.
  
     0.671
yqeH
Ribosome biogenesis GTPase YqeH.
  
     0.646
Your Current Organism:
Streptococcus ictaluri
NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05
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