STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI68624.1ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (177 aa)    
Predicted Functional Partners:
EHI68684.1
ABC transporter, permease protein.
 
 0.997
EHI69705.1
ABC transporter, substrate-binding protein, family 3.
 
 0.950
EHI68713.1
Amino acid ABC transporter, ATP-binding family protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
     0.940
EHI70283.1
Putative glutamine ABC transporter, permease protein GlnP.
 
 0.939
EHI68574.1
ABC transporter, permease protein.
 
 0.923
EHI70160.1
Putative glutamine ABC transporter, permease protein GlnM.
 
 0.919
EHI69086.1
ABC transporter, permease protein.
 
 0.913
EHI69439.1
ABC transporter, permease protein.
 
 0.910
EHI69359.1
ABC transporter, permease protein.
 
 0.908
EHI69324.1
ABC transporter, permease protein.
 
 0.893
Your Current Organism:
Streptococcus ictaluri
NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05
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