Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EHI68758.1Transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein. (291 aa)    
Predicted Functional Partners:
EHI70871.1
Hypothetical protein.
   
    0.926
EHI68682.1
Transporter, major facilitator family protein.
 
     0.690
EHI69010.1
Putative tagatose 1,6-pyrophosphate aldolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
  
 
  0.600
lacD
Deoxyribose-phosphate aldolase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; Belongs to the aldolase LacD family.
  
 
  0.590
rseP
RIP metalloprotease RseP.
      
 0.577
EHI69610.1
DNA-binding helix-turn-helix protein.
   
    0.569
EHI70971.1
Putative membrane protein.
 
   
 0.494
EHI68614.1
Putative cadmium-exporting ATPase.
       0.485
EHI68606.1
Hydrolase, NUDIX family.
  
    0.454
EHI69373.1
Peptidase, S8/S53 domain protein.
  
     0.415
Your Current Organism:
Streptococcus ictaluri
NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05
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