Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHI68543.1ABC transporter, permease protein. (453 aa)    
Predicted Functional Partners:
EHI68572.1
ABC transporter, permease protein.
 
 0.999
EHI68779.1
Maltose/maltodextrin ABC transporter, maltose/maltodextrin-binding protein.
 
 0.999
EHI70904.1
TOBE domain protein; Belongs to the ABC transporter superfamily.
 
 0.999
EHI70000.1
Hypothetical protein.
 
 0.962
EHI70058.1
ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
 0.952
EHI68907.1
ABC transporter, solute-binding protein.
  
 0.944
EHI68974.1
ABC transporter, permease protein.
 
 0.925
EHI70345.1
Putative lipoprotein.
  
 0.913
EHI70818.1
ABC transporter, solute-binding protein.
  
 0.909
EHI70885.1
ABC transporter, permease protein.
 
 0.900
Your Current Organism:
Streptococcus ictaluri
NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05
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