Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHI69910.1ABC transporter, ATP-binding protein. (236 aa)    
Predicted Functional Partners:
EHI69827.1
Efflux ABC transporter, permease protein.
 0.999
EHI69709.1
Efflux transporter, RND family, MFP subunit.
 
 
 0.990
EHI69584.1
Hypothetical protein.
  
 0.981
EHI69632.1
Efflux ABC transporter, permease protein.
  
 0.981
EHI69230.1
ABC transporter, ATP-binding protein.
 
0.933
EHI69921.1
Efflux ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
 0.861
EHI69352.1
SNARE-like domain protein.
       0.845
EHI70144.1
ABC transporter, ATP-binding protein.
 
    
0.824
EHI69714.1
KH domain protein; Belongs to the UPF0109 family.
     
 0.783
EHI70123.1
ABC transporter, ATP-binding protein.
   
0.783
Your Current Organism:
Streptococcus ictaluri
NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05
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