carB protein (Streptococcus ictaluri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

carB

Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family. (1048 aa)

Predicted Functional Partners:

carA

0.999

pyrB

0.999

pyrC

0.998

argF

0.994

pyrD

0.993

pyrR

0.988

pyrE

0.985

pyrF

0.981

EHI69176.1

0.979

EHI68964.1

0.978

Your Current Organism:

Streptococcus ictaluri

NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EHI68964.1	EHI69176.1	STRIC_1985	STRIC_1984	Argininosuccinate synthase-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Arginosuccinate synthase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.988
EHI68964.1	argF	STRIC_1985	STRIC_0285	Argininosuccinate synthase-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.935
EHI68964.1	carA	STRIC_1985	STRIC_1409	Argininosuccinate synthase-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.	0.879
EHI68964.1	carB	STRIC_1985	STRIC_1408	Argininosuccinate synthase-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.	0.978
EHI68964.1	pyrB	STRIC_1985	STRIC_1410	Argininosuccinate synthase-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.800
EHI69176.1	EHI68964.1	STRIC_1984	STRIC_1985	Arginosuccinate synthase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Argininosuccinate synthase-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.988
EHI69176.1	argF	STRIC_1984	STRIC_0285	Arginosuccinate synthase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.935
EHI69176.1	carA	STRIC_1984	STRIC_1409	Arginosuccinate synthase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.	0.879
EHI69176.1	carB	STRIC_1984	STRIC_1408	Arginosuccinate synthase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.	0.979
EHI69176.1	pyrB	STRIC_1984	STRIC_1410	Arginosuccinate synthase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.800
argF	EHI68964.1	STRIC_0285	STRIC_1985	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Argininosuccinate synthase-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.935
argF	EHI69176.1	STRIC_0285	STRIC_1984	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Arginosuccinate synthase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.935
argF	carA	STRIC_0285	STRIC_1409	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.	0.987
argF	carB	STRIC_0285	STRIC_1408	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.	0.994
argF	pyrB	STRIC_0285	STRIC_1410	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.905
carA	EHI68964.1	STRIC_1409	STRIC_1985	Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.	Argininosuccinate synthase-like protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; Belongs to the argininosuccinate synthase family. Type 1 subfamily.	0.879
carA	EHI69176.1	STRIC_1409	STRIC_1984	Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.	Arginosuccinate synthase domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.879
carA	argF	STRIC_1409	STRIC_0285	Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.	Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.	0.987
carA	carB	STRIC_1409	STRIC_1408	Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.	Carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.	0.999
carA	pyrB	STRIC_1409	STRIC_1410	Carbamoyl-phosphate synthase, small subunit; Belongs to the CarA family.	Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.999

page 1 of 4

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About