Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppF_1Oligopeptide ABC transporter, ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (310 aa)    
Predicted Functional Partners:
EHI69127.1
ABC transporter, permease protein.
 0.995
EHI69096.1
ABC transporter, permease protein.
 
 0.993
EHI70062.1
ABC transporter, permease protein.
 0.993
EHI69269.1
ABC transporter, substrate-binding protein, family 5.
 
 0.989
oppD_1
Oligopeptide ABC transporter, ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
0.970
EHI69591.1
ABC transporter, permease protein.
 0.964
EHI68853.1
ABC transporter, permease protein.
 
 0.962
EHI69090.1
ABC transporter, permease protein.
 
 0.961
EHI70290.1
Putative nickel transport system permease protein NikB.
 
 0.957
sarA
Oligopeptide-binding protein SarA.
 
 0.946
Your Current Organism:
Streptococcus ictaluri
NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05
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