STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHI69216.1Site-specific recombinase, phage integrase domain protein. (117 aa)    
Predicted Functional Partners:
EHI68960.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.642
EHI70704.1
Site-specific recombinase, phage integrase family; Overlaps another CDS with the same product name.
  
     0.639
EHI69139.1
Integrase core domain protein.
       0.561
EHI70235.1
Site-specific recombinase, phage integrase family; Belongs to the 'phage' integrase family.
  
     0.535
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 
   0.475
rpmE
Ribosomal protein L31.
  
 
 
 0.471
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
 
 
   0.456
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
   0.450
EHI68859.1
Hypothetical protein.
       0.442
EHI69704.1
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.
     
 0.416
Your Current Organism:
Streptococcus ictaluri
NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05
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