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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sarAOligopeptide-binding protein SarA. (656 aa)    
Predicted Functional Partners:
EHI69090.1
ABC transporter, permease protein.
 
 
 0.970
EHI68853.1
ABC transporter, permease protein.
 
 
 0.961
oppD_2
Oligopeptide ABC transporter, ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.961
oppF_2
Oligopeptide ABC transporter, ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.955
EHI69096.1
ABC transporter, permease protein.
 
 
 0.850
oppD_1
Oligopeptide ABC transporter, ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.842
EHI69127.1
ABC transporter, permease protein.
 
 
 0.818
oppF_1
Oligopeptide ABC transporter, ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.803
EHI70290.1
Putative nickel transport system permease protein NikB.
 
 
 0.760
EHI69591.1
ABC transporter, permease protein.
 
 
 0.758
Your Current Organism:
Streptococcus ictaluri
NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.