Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EHI69177.1Phage major capsid protein E-like protein. (349 aa)    
Predicted Functional Partners:
EHI69033.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
     0.908
EHI69014.1
Hypothetical protein.
       0.833
EHI69223.1
DNA packaging protein, QLRG family.
       0.764
EHI68867.1
Hypothetical protein.
       0.761
EHI69969.1
Terminase small subunit.
 
     0.719
EHI68970.1
Phage portal protein, SPP1 family.
 
     0.697
EHI69265.1
Phage head morphogenesis protein, SPP1 gp7 family.
 
     0.551
EHI69165.1
Phage major tail protein, TP901-1 family.
 
     0.527
EHI69095.1
Hypothetical protein.
       0.469
EHI68901.1
Hypothetical protein.
       0.459
Your Current Organism:
Streptococcus ictaluri
NCBI taxonomy Id: 764299
Other names: S. ictaluri 707-05, Streptococcus ictaluri 707-05, Streptococcus ictaluri str. 707-05, Streptococcus ictaluri strain 707-05
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