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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV64506.1COGs: COG1938 protein of ATP-grasp superfamily; KEGG: tag:Tagg_0179 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: PAC2 family. (260 aa)    
Predicted Functional Partners:
ADV64505.1
Hypothetical protein; InterPro IPR002068; KEGG: smr:Smar_1280 hypothetical protein; SPTR: Putative uncharacterized protein; Belongs to the small heat shock protein (HSP20) family.
       0.841
ADV65558.1
Protein of unknown function DUF127; Specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs; Belongs to the aTrm56 family.
 
     0.539
ADV64513.1
Protein of unknown function DUF460; COGs: COG2433 conserved hypothetical protein; InterPro IPR007408; KEGG: dka:DKAM_0023 DUF460 domain containing protein; PFAM: protein of unknown function DUF460; SPTR: DUF460 domain containing protein; PFAM: Protein of unknown function (DUF460).
  
     0.535
ADV64532.1
COGs: COG0704 Phosphate uptake regulator; InterPro IPR007159: IPR008170; KEGG: dka:DKAM_0069 phosphate uptake regulator, PhoU; PFAM: PhoU family protein; SpoVT/AbrB domain-containing protein; SPTR: Phosphate uptake regulator, PhoU; PFAM: PhoU domain; SpoVT / AbrB like domain.
 
     0.512
ADV64507.1
COGs: COG4755 conserved hypothetical protein; InterPro IPR014450; KEGG: dka:DKAM_0017 hypothetical protein; PFAM: Uncharacterised conserved protein UCP008210; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in archaea (DUF2153).
       0.482
ADV65402.1
NMD3 family protein; COGs: COG1499 NMD protein affecting ribosome stability and mRNA decay; InterPro IPR007064; KEGG: dka:DKAM_1085 NMD protein affecting ribosome stability and mRNA decay-like protein; PFAM: NMD3 family protein; SPTR: NMD protein affecting ribosome stability and mRNA decay-like protein; PFAM: NMD3 family.
 
   
 0.474
ADV65579.1
DNA polymerase beta domain protein region; COGs: COG2413 nucleotidyltransferase; InterPro IPR002934: IPR009185; KEGG: dka:DKAM_1297 DNA polymerase, beta domain protein region; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase, beta domain protein region; PFAM: Nucleotidyltransferase domain.
  
     0.461
psmA
Proteasome endopeptidase complex, alpha subunit; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation.
   
 
 0.447
rps3ae
COGs: COG1890 Ribosomal protein S3AE; InterPro IPR001593: IPR018281; KEGG: dka:DKAM_1335 30S ribosomal protein S3Ae; PFAM: ribosomal protein S3Ae; SPTR: 30S ribosomal protein S3Ae; PFAM: Ribosomal S3Ae family; Belongs to the eukaryotic ribosomal protein eS1 family.
 
     0.436
ADV64350.1
Protein of unknown function DUF655; COGs: COG1491 RNA-binding protein; InterPro IPR007003; KEGG: dka:DKAM_1406 DNA-binding protein; PFAM: protein of unknown function DUF655; SPTR: DNA-binding protein; PFAM: Protein of unknown function, DUF655.
 
     0.428
Your Current Organism:
Desulfurococcus mucosus
NCBI taxonomy Id: 765177
Other names: D. mucosus DSM 2162, Desulfurococcus mucosus DSM 2162, Desulfurococcus mucosus JCM 9187, Desulfurococcus mucosus str. DSM 2162, Desulfurococcus mucosus strain DSM 2162
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