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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADV65255.1COGs: COG1779 C4-type Zn-finger protein; InterPro IPR004457: IPR004470; KEGG: dka:DKAM_0224 ZPR1-related zinc finger protein; SPTR: ZPR1-related zinc finger protein; TIGRFAM: ZPR1-related zinc finger protein; ZPR1-like zinc finger protein; PFAM: ZPR1 zinc-finger domain; TIGRFAM: ZPR1 zinc finger domain; ZPR1-related zinc finger protein. (177 aa)    
Predicted Functional Partners:
ADV65254.1
Radical SAM domain protein; COGs: COG1533 DNA repair photolyase; InterPro IPR018130: IPR007197: IPR006638; KEGG: shc:Shell_0417 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Radical SAM domain protein; PFAM: Radical SAM superfamily.
       0.876
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.
  
 
 
 0.755
ADV65380.1
Nucleotide binding protein, PINc; COGs: COG1439 nucleic acid-binding protein consists of a PIN domain and a Zn-ribbon module; KEGG: dka:DKAM_1064 nucleotide binding protein, PINc; SPTR: Nucleotide binding protein, PINc.
   
    0.534
ADV65253.1
COGs: COG0794 sugar phosphate isomerase involved in capsule formation; InterPro IPR017552: IPR001347; KEGG: dka:DKAM_0222 putative 6-phospho-3-hexuloisomerase; PFAM: sugar isomerase (SIS); PRIAM: 6-phospho-3-hexuloisomerase; SPTR: Putative 6-phospho-3-hexuloisomerase; TIGRFAM: 6-phospho 3-hexuloisomerase; PFAM: SIS domain; TIGRFAM: 6-phospho 3-hexuloisomerase.
       0.508
albA
Nucleoid protein Alba; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family.
  
     0.496
ADV64824.1
COGs: COG0495 Leucyl-tRNA synthetase; InterProIPR001412: IPR004493: IPR015413: IPR020754: IPR 013155; KEGG: dka:DKAM_0624 leucyl-tRNA synthetase; PFAM: tRNA synthetase valyl/leucyl anticodon-binding; tRNA synthetase class I (M); Lysyl-tRNA synthetase, class Ic; SPTR: Leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, archaeal and cytosolic family; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
   0.427
ADV65566.1
Small GTP-binding protein; COGs: COG1084 GTPase; InterPro IPR002917: IPR006073: IPR005225; KEGG: dka:DKAM_1284 small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; SPTR: Small GTP-binding protein; TIGRFAM: small GTP-binding protein; PFAM: GTPase of unknown function; TIGRFAM: small GTP-binding protein domain.
 
    0.410
Your Current Organism:
Desulfurococcus mucosus
NCBI taxonomy Id: 765177
Other names: D. mucosus DSM 2162, Desulfurococcus mucosus DSM 2162, Desulfurococcus mucosus JCM 9187, Desulfurococcus mucosus str. DSM 2162, Desulfurococcus mucosus strain DSM 2162
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