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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pthpeptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. (115 aa)    
Predicted Functional Partners:
ADV65393.1
tRNA pseudouridine synthase D TruD; COGs: COG0585 conserved hypothetical protein; InterPro IPR001656: IPR011760; KEGG: dka:DKAM_1075 tRNA pseudouridine synthase D; PFAM: tRNA pseudouridine synthase D TruD; SPTR: tRNA pseudouridine synthase D; PFAM: tRNA pseudouridine synthase D (TruD); TIGRFAM: tRNA pseudouridine synthase, TruD family.
 
     0.864
ef1b
Translation elongation factor 1B (aEF-1B); Promotes the exchange of GDP for GTP in EF-1-alpha/GDP, thus allowing the regeneration of EF-1-alpha/GTP that could then be used to form the ternary complex EF-1-alpha/GTP/AAtRNA.
  
    0.712
ADV65395.1
Protein of unknown function DUF1610; COGs: COG2888 Zn-ribbon RNA-binding protein with a function in translation; InterPro IPR011668; KEGG: dka:DKAM_1077 predicted Zn-ribbon RNA-binding protein; PFAM: protein of unknown function DUF1610; SPTR: Predicted Zn-ribbon RNA-binding protein; PFAM: Domain of unknown function (DUF1610).
       0.640
ADV64368.1
COGs: COG1093 Translation initiation factor 2 alpha subunit (eIF-2alpha); InterPro IPR003029: IPR011488; KEGG: dka:DKAM_1424 translation initiation factor IF-2 subunit alpha; PFAM: translation initiation factor 2, alpha subunit; RNA binding S1 domain protein; SPTR: Translation initiation factor IF-2 subunit alpha; PFAM: Eukaryotic translation initiation factor 2 alpha subunit; S1 RNA binding domain.
  
    0.439
ADV64970.1
Protein of unknown function ATP binding protein; COGs: COG1100 GTPase SAR1 and related small G protein; InterPro IPR004130; KEGG: dka:DKAM_0278 GTPase; PFAM: protein of unknown function ATP binding; SPTR: Putative uncharacterized protein; PFAM: Conserved hypothetical ATP binding protein.
  
 
  0.427
ADV65405.1
KH domain protein; COGs: COG1094 RNA-binding protein (contains KH domains); InterPro IPR019964: IPR018111: IPR004087; KEGG: dka:DKAM_1088 putative RNA-processing protein; PFAM: K Homology, type 1, subgroup; SPTR: Predicted RNA-binding protein (Contains KH domains); TIGRFAM: KH domain protein; PFAM: KH domain; TIGRFAM: arCOG04150 universal archaeal KH domain protein.
  
    0.426
ADV64900.1
Protein of unknown function ATP binding protein; COGs: COG1100 GTPase SAR1 and related small G protein; InterPro IPR004130; KEGG: dka:DKAM_0542 GTPase; PFAM: protein of unknown function ATP binding; SPTR: Predicted ATP binding protein; PFAM: Conserved hypothetical ATP binding protein.
  
 
  0.414
Your Current Organism:
Desulfurococcus mucosus
NCBI taxonomy Id: 765177
Other names: D. mucosus DSM 2162, Desulfurococcus mucosus DSM 2162, Desulfurococcus mucosus JCM 9187, Desulfurococcus mucosus str. DSM 2162, Desulfurococcus mucosus strain DSM 2162
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