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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps3SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (222 aa)    
Predicted Functional Partners:
rpl21e
COGs: COG2139 Ribosomal protein L21E; InterPro IPR018259: IPR001147; KEGG: dka:DKAM_1408 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; SPTR: 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
   
 
 0.999
rpl10e
COGs: COG0197 Ribosomal protein L16/L10E; InterPro IPR018255: IPR001197: IPR016180; KEGG: dka:DKAM_1411 50S ribosomal protein L10e; PFAM: Ribosomal protein L10e/L16; SPTR: 50S ribosomal protein L10e; PFAM: Ribosomal protein L16p/L10e; TIGRFAM: ribosomal protein L10.e; Belongs to the universal ribosomal protein uL16 family.
  
 
 0.999
ADV64430.1
KEGG: dka:DKAM_0962 30S ribosomal protein S25e; SPTR: 30S ribosomal protein S25e.
   
 0.999
ADV64512.1
COGs: COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain; InterProIPR008266: IPR018935: IPR000687: IPR015285: IPR 018934; KEGG: dka:DKAM_0022 RIO-like serine/threonine kinase; PFAM: RIO-like kinase; RIO2 kinase, winged helix domain protein; PRIAM: Non-specific serine/threonine protein kinase; SMART: protein of unknown function RIO1; SPTR: RIO-like serine/threonine kinase; PFAM: RIO1 family; Rio2, N-terminal.
   
 0.999
ADV64544.1
COGs: COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related protein; InterPro IPR001950: IPR017228; KEGG: dka:DKAM_0055 translation initiation factor SUI1; PFAM: translation initiation factor SUI1; SPTR: Translation initiation factor 1 (EIF-1/SUI1); PFAM: Translation initiation factor SUI1; TIGRFAM: translation initation factor SUI1, putative, prokaryotic; Belongs to the SUI1 family.
  
 
 0.999
eif5a
Translation initiation factor 5A precursor (eIF-5A); Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
   
 
 0.999
rpl44e
LSU ribosomal protein L44E; Binds to the 23S rRNA.
   
 
 0.999
ADV65324.1
LSU ribosomal protein L40E; InterPro IPR001975; KEGG: dka:DKAM_0862 50S ribosomal protein L40e; PFAM: Ribosomal protein L40e; SPTR: 50S ribosomal protein L40e; PFAM: Ribosomal L40e family; Belongs to the eukaryotic ribosomal protein eL40 family.
   
 0.999
ADV65380.1
Nucleotide binding protein, PINc; COGs: COG1439 nucleic acid-binding protein consists of a PIN domain and a Zn-ribbon module; KEGG: dka:DKAM_1064 nucleotide binding protein, PINc; SPTR: Nucleotide binding protein, PINc.
    
 0.999
eif1a
Translation initiation factor 1A (aeIF-1A); Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
  
 0.999
Your Current Organism:
Desulfurococcus mucosus
NCBI taxonomy Id: 765177
Other names: D. mucosus DSM 2162, Desulfurococcus mucosus DSM 2162, Desulfurococcus mucosus JCM 9187, Desulfurococcus mucosus str. DSM 2162, Desulfurococcus mucosus strain DSM 2162
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