STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0C9XNE6Unplaced genomic scaffold scaffold_280, whole genome shotgun sequence. (172 aa)    
Predicted Functional Partners:
A0A0D0A6N7
Unplaced genomic scaffold scaffold_3, whole genome shotgun sequence.
   
 0.937
A0A0C9ZDM2
Unplaced genomic scaffold scaffold_12, whole genome shotgun sequence.
   
 0.929
A0A0C9ZBA1
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.914
A0A0D0A6H4
Small nuclear ribonucleoprotein Sm D3.
   
 0.913
A0A0C9ZGA6
Unplaced genomic scaffold scaffold_110, whole genome shotgun sequence; Belongs to the DEAD box helicase family.
   
 0.910
A0A0D0A9H8
Small nuclear ribonucleoprotein Sm D2.
   
 0.909
A0A0D0A1V4
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.904
A0A0C9YZ74
Small nuclear ribonucleoprotein G.
   
  0.900
A0A0C9ZMP2
Unplaced genomic scaffold scaffold_40, whole genome shotgun sequence.
   
 0.893
A0A0C9YRZ3
Unplaced genomic scaffold scaffold_339, whole genome shotgun sequence.
   
 0.883
Your Current Organism:
Pisolithus microcarpus
NCBI taxonomy Id: 765257
Other names: P. microcarpus 441, Pisolithus microcarpus 441
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.