STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0002ATPase involved in chromosome partitioning-like protein. (264 aa)    
Predicted Functional Partners:
OSCT_0035
Undecaprenyl-phosphate galactose phosphotransferase.
 
 
 0.899
OSCT_2644
Undecaprenyl-phosphate glucose phosphotransferase.
 
 
 0.899
OSCT_0475
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
 
 0.898
OSCT_1611
Lipopolysaccharide biosynthesis protein.
 
 
 0.886
OSCT_1909
NADH dehydrogenase (quinone).
     
 0.871
OSCT_1612
Exopolysaccharide tyrosine-protein kinase.
  
     0.767
hypA
Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
   
   0.613
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
    
 0.608
OSCT_0001
Lipopolysaccharide biosynthesis protein.
       0.596
OSCT_1610
Lipopolysaccharide biosynthesis protein.
  
 
 0.553
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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