Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0003Hypothetical protein. (447 aa)    
Predicted Functional Partners:
OSCT_0005
Polysaccharide biosynthesis protein.
  
  
 0.715
OSCT_0004
Hypothetical protein.
       0.651
OSCT_0035
Undecaprenyl-phosphate galactose phosphotransferase.
  
 
 0.600
OSCT_0475
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.600
OSCT_2644
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.600
OSCT_0006
Hexapaptide repeat-containing transferase.
  
  
 0.493
OSCT_2899
Glycosyl transferase family 2.
  
  
 0.446
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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