STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0018IS605 family transposase OrfB. (365 aa)    
Predicted Functional Partners:
OSCT_0372
Transposon IS605 OrfB.
  
     0.774
OSCT_0420
Transposon IS605 OrfB.
  
     0.774
OSCT_2157
Hypothetical protein.
  
     0.755
OSCT_2149
Hypothetical protein.
  
     0.753
OSCT_2158
Resolvase related protein.
 
    0.752
OSCT_1047
Transposase.
  
     0.735
OSCT_0019
Hypothetical protein.
       0.658
OSCT_0020
Hypothetical protein.
       0.574
OSCT_0017
Serine acetyltransferase.
       0.404
OSCT_2741
Hypothetical protein.
  
     0.400
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.