STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0043Secretion protein HlyD family protein. (524 aa)    
Predicted Functional Partners:
OSCT_0042
ABC transporter related protein.
 
    0.952
OSCT_0044
ABC-2 type transporter.
  
 0.942
OSCT_0041
ABC transporter related protein.
 
    0.922
OSCT_0039
Lycopene beta and epsilon cyclase.
     
 0.673
OSCT_0040
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.671
OSCT_1852
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.616
OSCT_1329
Protein of unknown function DUF214.
 
  
 0.610
OSCT_0805
Hypothetical protein.
 
  
 0.607
OSCT_2274
Hypothetical protein.
 
  
 0.585
OSCT_2273
Protein of unknown function DUF214.
 
  
 0.584
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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