Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0056Hypothetical protein. (397 aa)    
Predicted Functional Partners:
OSCT_2317
Dihydroxyacetone kinase, phosphotransfer subunit.
    
 0.915
OSCT_0551
Glutamate synthase (ferredoxin).
    
 0.912
OSCT_0472
Cytochrome c class I.
   
 
 0.858
OSCT_2596
Cytochrome c oxidase, subunit II.
   
 
 0.858
OSCT_0055
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
  0.831
OSCT_1909
NADH dehydrogenase (quinone).
     
 0.819
OSCT_1666
Hypothetical protein.
    
 0.813
OSCT_2591
Fe-S-cluster-containing hydrogenase components 1-like protein.
    
 0.795
OSCT_2664
Fe-S-cluster-containing hydrogenase components 1-like protein.
    
 0.795
OSCT_2012
Chromosome segregation ATPase-like protein.
    
   0.732
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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