Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OSCT_0059Alpha-L-arabinofuranosidase-like protein. (584 aa)    
Predicted Functional Partners:
OSCT_1386
Glycoside hydrolase family 2 TIM barrel.
 
  
 0.805
OSCT_0058
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
       0.773
OSCT_2967
Hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.738
OSCT_0859
FG-GAP repeat protein.
 
  
  0.726
OSCT_1756
GCN5-related N-acetyltransferase.
  
     0.652
OSCT_1375
Hypothetical protein.
  
     0.619
OSCT_0232
HEAT repeat-containing PBS lyase.
  
     0.616
OSCT_2299
Xylose isomerase domain-containing protein.
  
 
  0.610
OSCT_1859
Hypothetical protein.
  
     0.583
OSCT_0014
Hypothetical protein.
  
     0.581
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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