Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0099Alpha/beta hydrolase fold-containing protein. (365 aa)    
Predicted Functional Partners:
OSCT_1900
Hypothetical protein.
   
 
 0.884
OSCT_0778
Short-chain dehydrogenase/reductase SDR.
  
 
 0.851
OSCT_1125
Dehydratase.
 
  
 0.825
OSCT_2106
PHA accumulation regulator DNA-binding protein.
 
   
 0.803
OSCT_0100
Short-chain dehydrogenase/reductase SDR.
 
 
 0.793
OSCT_0098
Hypothetical protein.
       0.587
OSCT_1424
AMP-dependent synthetase and ligase.
   
 
 0.524
OSCT_0507
Beta-ketoacyl synthase.
   
 
 0.510
OSCT_2549
Hypothetical protein.
    
 0.476
OSCT_1638
Hypothetical protein.
    
 0.475
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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