Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OSCT_0107Rrf2 family transcriptional regulator. (146 aa)    
Predicted Functional Partners:
OSCT_0542
Aminotransferase class V.
  
 
 0.867
OSCT_0108
VWA containing CoxE family protein.
       0.543
OSCT_0106
Bacteriochlorophyll 4-vinyl reductase.
  
    0.516
OSCT_1488
NifU family SUF system FeS assembly protein.
  
  
 0.477
OSCT_2072
NifU family SUF system FeS assembly protein.
  
  
 0.477
OSCT_0105
Magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase.
  
    0.455
OSCT_0104
Oxygen-independent coproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.444
OSCT_2720
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
     
 0.438
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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