Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OSCT_0161AAA ATPase central domain protein. (462 aa)    
Predicted Functional Partners:
OSCT_0162
Type II secretion system protein E.
 
     0.744
OSCT_2760
Type II secretion system protein.
 
    0.614
OSCT_2761
Type II secretion system protein.
 
    0.601
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
       0.542
OSCT_0664
Hypothetical protein.
 
     0.523
OSCT_2763
Response regulator receiver protein.
 
    0.499
OSCT_0663
Hypothetical protein.
 
     0.475
OSCT_0604
Hypothetical protein.
  
     0.466
OSCT_2730
Protein kinase.
 
    0.432
OSCT_2762
Type II secretion system protein E.
 
     0.410
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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