STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0217Roadblock/LC7 family protein. (164 aa)    
Predicted Functional Partners:
OSCT_0218
Hypothetical protein.
 
 
 0.959
OSCT_2557
Mutual gliding protein A.
 
 
 0.921
OSCT_0216
roadblock/LC7 family protein.
 
     0.855
OSCT_0219
Hypothetical protein.
 
     0.854
OSCT_0999
Hypothetical protein.
 
     0.773
OSCT_2556
Response regulator receiver.
  
     0.729
OSCT_0236
Hypothetical protein.
  
     0.685
OSCT_0235
Small GTP-binding protein.
  
 
 0.633
OSCT_0998
Small GTP-binding protein.
  
 
 0.633
OSCT_2807
roadblock/LC7 family protein.
  
     0.561
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.