STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0247Cell shape determining protein MreB. (359 aa)    
Predicted Functional Partners:
OSCT_0248
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 0.980
OSCT_0250
Peptidoglycan glycosyltransferase.
 
 
 
 0.947
OSCT_1791
Response regulator receiver protein.
  
 
 0.839
OSCT_2473
Helix-turn-helix domain-containing protein.
  
 
 0.831
OSCT_2805
Cell cycle protein; Belongs to the SEDS family.
 
 
 0.818
OSCT_0249
Hypothetical protein.
       0.792
OSCT_2189
Lytic transglycosylase catalytic.
  
 
 0.586
OSCT_0771
Peptidoglycan glycosyltransferase.
 
 
 
 0.582
tig
Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.
  
   0.579
pheT
phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.576
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.