STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0280DEAD/DEAH box helicase-like protein. (711 aa)    
Predicted Functional Partners:
OSCT_0283
Hypothetical protein.
 
     0.931
OSCT_0282
Hypothetical protein.
 
     0.930
OSCT_0284
CRISPR-associated Cas family protein.
 
     0.889
OSCT_0281
Hypothetical protein.
       0.787
OSCT_0916
fdxN element excision controlling factor XisH.
  
     0.736
OSCT_0285
CRISPR-associated Cas4 family protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
 
     0.725
OSCT_2376
Hypothetical protein.
  
     0.717
OSCT_1779
Signal transduction protein with Nacht domain.
  
     0.668
OSCT_2174
Cobyrinic acid ac-diamide synthase.
 
     0.577
OSCT_1047
Transposase.
  
     0.540
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.