STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0283Hypothetical protein. (217 aa)    
Predicted Functional Partners:
OSCT_0282
Hypothetical protein.
 
     0.950
OSCT_0280
DEAD/DEAH box helicase-like protein.
 
     0.927
OSCT_0284
CRISPR-associated Cas family protein.
 
     0.912
OSCT_0285
CRISPR-associated Cas4 family protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
 
     0.797
OSCT_0916
fdxN element excision controlling factor XisH.
  
     0.728
OSCT_0281
Hypothetical protein.
       0.706
OSCT_1779
Signal transduction protein with Nacht domain.
  
     0.696
OSCT_2376
Hypothetical protein.
  
     0.696
OSCT_2174
Cobyrinic acid ac-diamide synthase.
  
     0.608
OSCT_2179
Cobyrinic acid ac-diamide synthase.
  
     0.591
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.