STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSCT_0411Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (159 aa)    
Predicted Functional Partners:
OSCT_0412
Fructosamine kinase.
     0.946
OSCT_1538
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
  
   0.720
OSCT_0410
Amidohydrolase.
       0.705
hisS
histidyl-tRNA synthetase.
      0.658
OSCT_0413
SMC_MARAV RecName: Full=Ribosomal RNA small subunit methyltransferase C; AltName: Full=rRNA (guanine-N(2)-)-methyltransferase rsmC; AltName: Full=16S rRNA m2G1207 methyltransfera; Belongs to the methyltransferase superfamily.
       0.651
OSCT_0035
Undecaprenyl-phosphate galactose phosphotransferase.
  
 
 0.615
OSCT_0475
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
 
 0.615
OSCT_2644
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.615
OSCT_1583
Thioredoxin domain-containing protein.
  
 
 0.581
OSCT_3085
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.581
Your Current Organism:
Oscillochloris trichoides
NCBI taxonomy Id: 765420
Other names: O. trichoides DG-6, Oscillochloris trichoides DG-6, Oscillochloris trichoides str. DG-6, Oscillochloris trichoides strain DG-6
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